Possible Spreading of SARS-CoV-2 from Humans to Captive Non-Human Primates in the Peruvian Amazon.

Human-to-animal transmission events of SARS-CoV-2 (Severe Acute Respiratory Syndrome Coronavirus 2) have been reported in both domestic and wild species worldwide. Despite the high rates of contagion and mortality during the COVID-19 (Coronavirus Diseases 2019) pandemic in Peru, no instances of natural virus infection have been documented in wild animals, particularly in the Amazonian regions where human-wildlife interactions are prevalent. In this study, we conducted a surveillance investigation using viral RNA sequencing of fecal samples collected from 76 captive and semi-captive non-human primates (NHPs) in the Loreto, Ucayali, and Madre de Dios regions between August 2022 and February 2023. We detected a segment of the RNA-dependent RNA polymerase (RdRp) gene of SARS-CoV-2 by metagenomic sequencing in a pooled fecal sample from captive white-fronted capuchins (Cebus unicolor) at a rescue center in Bello Horizonte, Ucayali. Phylogenetic analysis further confirmed that the retrieved partial sequence of the RdRp gene matched the SARS-CoV-2 genome. This study represents the first documented instance of molecular SARS-CoV-2 detection in NHPs in the Peruvian Amazon, underscoring the adverse impact of anthropic activities on the human-NHP interface and emphasizing the importance of ongoing surveillance for early detection and prediction of future emergence of new SARS-CoV-2 variants in animals.

Elevated mercury exposure in bird communities inhabiting Artisanal and Small-Scale Gold Mining landscapes of the southeastern Peruvian Amazon.

Artisanal and Small-Scale Gold Mining (ASGM) represents a significant source of anthropogenic mercury emissions to the environment, with potentially severe implications for avian biodiversity. In the Madre de Dios department of the southern Peruvian Amazon, ASGM activities have created landscapes marred by deforestation and post-mining water bodies (mining ponds) with notable methylation potential. While data on Hg contamination in terrestrial wildlife remains limited, this study measures Hg exposure in several terrestrial bird species as bioindicators. Total Hg (THg) levels in feathers from birds near water bodies, including mining ponds associated with ASGM areas and oxbow lakes, were analyzed. Our results showed significantly higher Hg concentrations in birds from ASGM sites with mean ± SD of 3.14 ± 7.97 µg/g (range: 0.27 to 72.75 µg/g, n = 312) compared to control sites with a mean of 0.47 ± 0.42 µg/g (range: 0.04 to 1.89 µg/g, n = 52). Factors such as trophic guilds, ASGM presence, and water body area significantly influenced feather Hg concentrations. Notably, piscivorous birds exhibited the highest Hg concentration (31.03 ± 25.25 µg/g, n = 12) exceeding known concentrations that affect reproductive success, where one measurement of Chloroceryle americana (Green kingfisher; 72.7 µg/g) is among the highest ever reported in South America. This research quantifies Hg exposure in avian communities in Amazonian regions affected by ASGM, highlighting potential risks to regional bird populations.

Ethnoprimatology of the Shipibo of the upper Ucayali River, Perú.

In the Anthropocene, primate conservation can only take place when considering human culture, perspectives, and needs. Such approaches are increasingly important under the growing impact of anthropogenic activities and increasing number of threatened primates. The Amazon rainforest, rich in cultural and biological diversity, where indigenous people play a crucial role in primate conservation, provides ample opportunity to study human-primate interactions and the sociocultural context in which they occur. Human activities threaten the Amazon's fragile ecosystems and its primates, which play a key role in its maintenance and regeneration. This study focuses on one of the largest indigenous groups in the Peruvian Amazon: the Shipibo. Interviews and participant observation were used to investigate local perceptions of animal presence and depletion, food preferences, and how primates are incorporated into daily life and culture. Since time immemorial and still today, primates remain important in Shipibo culture, mythology, and subsistence. Local Shipibo participants consistently identified the presence of 13 species of primate. Primates were among the preferred species for consumption, pet keeping, and held a fundamental role in mythology, traditional knowledge, and storytelling. Large-bodied primates were often mentioned as being locally extinct, with reports and observations suggesting increasing consumption of smaller-bodied primates. Commonly perceived reasons for primate depletion include noise disturbance, hunting, and population growth, often in parallel. This study sheds light on the cultural context of an area rich in biodiversity, where primates, essential for ecological balance and integral to Shipibo lives and identity, are being depleted. We highlight the need for an inclusive ethnoprimatological approach to conserving primates and preserving indigenous heritage while improving local livelihoods.

Redescription of Brevimulticaecum baylisi () (Nematoda: Heterocheilidae), a parasite of Caiman crocodilus (Crocodylia: Alligatoridae) in the north-eastern Peruvian Amazon.

Caiman crocodilus is among the most abundant and widely distributed predators in the Neotropical region. These animals consume prey such as crustaceans, birds, small mammals, reptiles, amphibians, and fish, which can carry infective larval forms of nematodes. Brevimulticaecum has few studies on its morphology available, lacking detailed images. Therefore, the aim of this study was to redescribe Brevimulticaecum baylisi, stomach parasite of Caiman crocodilus, from subsistence hunting in the Yavari-Mirin River, Peruvian Amazon, using light and scanning electron microscopy. Four caimans were analyzed, and, macroscopically, all had ulcerative lesions in the stomach caused by this parasite. Histopathology showed an inflammatory infiltrate with a predominance of lymphocytes. Morphological characteristics of nematodes include the presence of three diamond-shaped lips wider than they are long, interlabia pyramidal, excretory pore located above the nerve ring, present intestinal cecum, ventriculus with five ventricular appendages, and long, winged spicules. These morphological characters, added to the number and distribution of the pre- and postcloacal papillae of the male specimens, allowed the identification of these parasites as B. baylisi. Scanning electron microscopy of these nematodes showed the presence of a dentigerous ridge on the inner surface of the lips in both sexes, while in males, the presence of a horseshoe-shaped median papilla was observed on the upper lip of the cloaca. Our research, therefore, adds these characteristics to the original description of B. baylisi, in addition to expanding the biogeographical distribution of this parasite.

Development of a Predictive Model of Cardiovascular Risk in a Male Population from the Peruvian Amazon.

BACKGROUND: The coexistence of malnutrition due to over- and under-nutrition in the Peruvian Amazon increases chronic diseases and cardiovascular risk. METHODS: A cross-sectional study of a male population where anthropometric, clinical, and demographic variables were obtained to create a binary logistic regression predictive model of cardiovascular risk. RESULTS: We compared two methods with good predictive results, finally choosing Model 4 (r2 = 0.57, sensitivity 73.68%, specificity 95.35%, Youden index 0.69, and validity index 94.21), with non-invasive variables such as blood pressure (p < 0.001), hip circumference (p < 0.001), and FINDRISC test result (p < 0.05); Conclusions: We developed a cheap, fast, and non-invasive tool to determine cardiovascular risk in the population of this endemic area.

Una nueva especie de Chrysochlamys (Clusiaceae, Clusioideae, Clusieae) del Parque Nacional Cordillera Azul, Loreto, Perú

Se describe e ilustra Chrysochlamys montieliae, nueva especie de la familia Clusiaceae, subfamilia Clusioideae, tribu Clusieae, procedente del Parque Nacional Cordillera Azul, del Departamento de Loreto. Siguiendo los criterios de la UICN, proponemos categorizarla como Datos Insuficientes (DD), debido a que solo es conocida de la localidad tipo. Igualmente, se discute sus relaciones con las especies afines.

Chrysochlamys montieliae, a new species of the Clusiaceae family, Clusioideae subfamily, Clusieae tribe, from the Cordillera Azul National Park, Department of Loreto, is described and illustrated. Following the IUCN criteria, we propose to categorize it as Data Deficient (DD), since it is only known from the type locality. In addition, their relationships with related species are discussed.

Genomic insights into ESBL-producing Escherichia coli isolated from non-human primates in the Peruvian Amazon.

Introduction: Extended-spectrum beta-lactamase (ESBL)-producing Enterobacteriaceae are on the WHO priority pathogens list because they are associated with high mortality, health-care burden, and antimicrobial resistance (AMR), a serious problem that threatens global public health and should be addressed through the One Health approach. Non-human primates (NHP) have a high risk of acquiring these antibiotic-resistant bacteria due to their close phylogenetic relationship with humans and increased anthropogenic activities in their natural environments. This study aimed to detect and analyze the genomes of ESBL-producing Escherichia coli (ESBL-producing E. coli) in NHP from the Peruvian Amazon. Materials and methods: We collected a total of 119 fecal samples from semi-captive Saguinus labiatus, Saguinus mystax, and Saimiri boliviensis, and captive Ateles chamek, Cebus unicolor, Lagothrix lagothricha, and Sapajus apella in the Loreto and Ucayali regions, respectively. Subsequently, we isolated and identified E. coli strains by microbiological methods, detected ESBL-producing E. coli through antimicrobial susceptibility tests following CLSI guidelines, and analyzed their genomes using previously described genomic methods. Results: We detected that 7.07% (7/99) of E. coli strains: 5.45% (3/55) from Loreto and 9.09% (4/44) from Ucayali, expressed ESBL phenotype. Genomic analysis revealed the presence of high-risk pandemic clones, such as ST10 and ST117, carrying a broad resistome to relevant antibiotics, including three blaCTX-M variants: blaCTX-M-15, blaCTX-M-55, and blaCTX-M-65. Phylogenomic analysis confirmed the clonal relatedness of high-risk lineages circulating at the human-NHP interface. Additionally, two ESBL-producing E. coli strains were identified as EPEC (eae) and ExPEC according to their virulence profiles, and one more presented a hypermucoviscous phenotype. Discussion: We report the detection and genomic analysis of seven ESBL-producing E. coli strains carrying broad resistome and virulence factors in NHP from two regions of the Peruvian Amazon. Some of these strains are closely related to high-risk pandemic lineages previously reported in humans and domestic animals, highlighting the negative impact of anthropogenic activities on Amazonian wildlife. To our knowledge, this is the first documentation of ESBL-producing E. coli in NHP from the Amazon, underscoring the importance of adopting the One Health approach to AMR surveillance and minimizing the potential transmission risk of antibiotic-resistant bacteria at the human-NHP interface.

Identifying contamination of heavy metals in soils of Peruvian Amazon plain: use of multivariate statistical techniques.

The Peruvian Amazon plain has abundant natural resources and is home to great biodiversity, which makes it an area with high economic potential. However, the use of its resources through various activities has contributed to the release of heavy metals (HMs) into its soils, generating severe pollution problems which have mainly affected the health of local populations and their ecosystems. Currently, there are no comprehensive studies that have identified the specific sources of contamination by HMs in the soils of this part of the Peruvian territory. In this sense, this research aims to identify the possible sources of contamination by HMs in the soils of the Peruvian Amazon plain to focus efforts on the establishment of adequate measures for the protection of the health of people and the ecosystem. In the present study, samples of topsoils (0-20 cm depth) and subsoils (100-150 cm depth) were collected for the analysis of 11 HMs (Co, Cr, Cu, Fe, Mn, Ni, Pb, V, Zn, Be, and Hg) in 48 sites located in four regions of the Peruvian Amazon plain (Loreto, Amazonas, San Martín, and Ucayali), over the year 2019. The enrichment factor and geoaccumulation index were applied to assess contamination levels of HMs. The results indicated that topsoils and subsoils presented a greater enrichment by the elements Be and Pb, and were classified as moderately contaminated. Likewise, the integral analysis of these indexes together with principal component analysis, hierarchical cluster analysis, correlation analysis, and coefficient of variation allowed the identification of potential sources of contamination by HMs. As a result, Fe, Co, Zn, Ni, V, and Cr were associated with natural or lithogenic sources (parent material, crude oil deposits, and organic matter decomposition). Hg was attributed to anthropogenic sources (illegal gold mining, atmospheric deposition, and vehicle emissions). Be, Pb, Cu, and Mn originated from natural sources (parent material, crude oil deposits, decomposition of organic matter, and forest fires) and anthropogenic (areas degraded by solid waste, illegal gold mining, agriculture, and hydrocarbons). These findings provide essential information to establish regulations and prevent and control HM contamination in soils of the Peruvian Amazon plain.

Perfiles hematológicos en pacientes infectados con malaria en un área endémica del Perú / Hematological profiles of malaria-infected patients in an endemic area of Peru

RESUMEN Objetivos. Evaluar la variación de los perfiles hematológicos antes, durante y después del tratamiento de pacientes infectados con malaria no complicada por Plasmodium vivax (Pv) y P. falciparum (Pf) en una población de la región Loreto. Materiales y métodos. El estudio se realizó entre 2010 y 2012, en Zungarococha (Iquitos). Los 425 participantes tuvieron tres visitas (visita 1-día 0-antes del tratamiento, visita 2-día 7-durante tratamiento, visita 3-día 28-después del tratamiento), hemograma completo, diagnóstico microscópico y molecular (PCR). Resultados. En la primera visita, se encontraron 93 (21,9%) positivos a Pv y 34 (8,0%) a Pf. Todos los positivos mostraron una reducción en los indicadores hematológicos de hematocrito, recuento de glóbulos blancos (RGB), neutrófilos abastonados y segmentados, eosinófilos y plaquetas (p<0.001) en comparación con el grupo negativo. Se encontró un porcentaje mayor de neutrófilos abastonados en Pf y de neutrófilos segmentados en Pv comparado al grupo negativo. Se observó variaciones en los perfiles hematológicos después del tratamiento para ambas especies, los neutrófilos abastonados disminuyeron, las plaquetas aumentaron, los eosinófilos se incrementaron al día 7 y decaen el día 28, el hematocrito y los neutrófilos segmentados disminuyeron al día 7 y se normalizaron el día 28. Las diferencias entre especies en el tiempo mostraron una disminución diaria de neutrófilos abastonados en infectados con Pv que en Pf. Conclusiones. El perfil hematológico en pacientes positivos a malaria no complicada varía en el tiempo durante y después del tratamiento. Estos son indicadores de la progresión de la enfermedad y ayudan en la vigilancia terapéutica de pacientes infectados con Plasmodium.

ABSTRACT Objectives. To evaluate the variation of hematological profiles of patients infected with uncomplicated Plasmodium vivax (Pv) and P. falciparum (Pf) malaria before, during and after treatment in a population of the Loreto region. Materials and methods. This study was conducted between 2010 and 2012, in Zungarococha (Iquitos). The 425 participants had three visits (visit 1-day 0-before treatment, visit 2-day 7-during treatment, visit 3-day 28-after treatment), complete blood count, microscopic and molecular diagnosis (PCR). Results. At the first visit, 93 (21.9%) participants were found positive for Pv and 34 (8.0%) for Pf. All positives showed a reduction in hematocrit, white blood cell count (WBC), ablated and segmented neutrophils, eosinophils and platelets (p<0.001) compared to the negative group. A higher percentage of ablated neutrophils was found in Pf and segmented neutrophils in Pv compared to the negative group. Variations in hematological profiles were observed after treatment for both species; ablated neutrophils decreased, platelets increased, eosinophils increased at day 7 and declined at day 28, hematocrit and segmented neutrophils decreased at day 7 and normalized at day 28. Interspecies differences over time showed a bigger daily decrease in ablated neutrophils in Pv-infected when compared to Pf. Conclusions. The hematological profile in uncomplicated malaria-positive patients varies over time during and after treatment. These are indicators of disease progression and help in the therapeutic surveillance of Plasmodium-infected patients.

Divergent Specialization of Simple Venom Gene Profiles among Rear-Fanged Snake Genera (Helicops and Leptodeira, Dipsadinae, Colubridae).

Many venomous animals express toxins that show extraordinary levels of variation both within and among species. In snakes, most studies of venom variation focus on front-fanged species in the families Viperidae and Elapidae, even though rear-fanged snakes in other families vary along the same ecological axes important to venom evolution. Here we characterized venom gland transcriptomes from 19 snakes across two dipsadine rear-fanged genera (Leptodeira and Helicops, Colubridae) and two front-fanged genera (Bothrops, Viperidae; Micrurus, Elapidae). We compared patterns of composition, variation, and diversity in venom transcripts within and among all four genera. Venom gland transcriptomes of rear-fanged Helicops and Leptodeira and front-fanged Micrurus are each dominated by expression of single toxin families (C-type lectins, snake venom metalloproteinase, and phospholipase A2, respectively), unlike highly diverse front-fanged Bothrops venoms. In addition, expression patterns of congeners are much more similar to each other than they are to species from other genera. These results illustrate the repeatability of simple venom profiles in rear-fanged snakes and the potential for relatively constrained venom composition within genera.

Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data.

The tropical rainforest of a highly dissected low hill from the upper Itaya river basin belongs to the western Amazonia region. Some investigations on the biodiversity of these rainforests were more focused on animals and plants diversity. The soils of this region are composed of moderately fertile sediments deposited recently from the initiation of the Andean orogenesis in the Miocene until now. However, scientific information about the soil microbial and functional diversity is still missing. This report presents shotgun metagenomics sequencing data from soils of this rainforest type. A composite loamy soil sample was collected from a primary forest, and metagenomic DNA was purified with standardized methods. Furthermore, libraries were prepared and paired-end sequenced on the Illumina NextSeq 550 platform. Raw Illumina paired-end reads have been uploaded and analysed in the Metagenomics RAST server (MG-RAST). The raw sequence data in fastq format is available at NCBI's Sequence Read Archive (SRA) with accession number SRX12846710.

Molecular characterization of Dipetalonema yatesi from the black-faced spider monkey (Ateles chamek) with phylogenetic inference of relationships among Dipetalonema of Neotropical primates.

Species of the genus Dipetalonema are parasitic nematodes of the family Onchocercidae (Nematoda; Filarioidea) which infect the peritoneal cavity of Neotropical primates. Of these, six species have been taxonomically described, two of these have been reported infecting the black-faced spider monkey (Ateles chamek): Dipetalonema gracile and Dipetalonema yatesi. Description of Dipetalonema species have been based on morphological characteristics, and their phylogenetic relationships remain unresolved. A few molecular studies have been carried out in Dipetalonema spp. infecting Neotropical primates. Seven filarioid nematodes (6 females and one male) recovered from one A. chamek in the Peruvian Amazon rainforest were morphologically identified as D. yatesi and molecularly characterized. A multi-locus genetic analysis of nuclear ribosomal region (18S) and mitochondrial (cox1, 12S, and nad5) gene sequences supported D. yatesi as a distinct lineage and yielded a highly resolved phylogenetic lineage tree for this filarioid genus of Neotropical primates. Our results highlighted that Dipetalonema species are divided in two well-supported clades, one containing D. yatesi and D. caudispina, and the second containing D. robini, D. gracile, and D. graciliformis. Due to sequence ambiguities from GenBank entries, relationships among isolates of D. gracile and D. graciliformis cannot be fully resolved, which requires further investigation. However, this suggests that these could represent a species complex. Our study confirms that D. yatesi is a valid species and constitutes the first molecular phylogenetic analysis of this parasite in black-faced spider monkeys.

Cotylophoron panamensis (Trematoda: Paramphistomidae) in Mazama americana (Artiodactyla: Cervidae) free-living in remote areas in the Peruvian Amazon.

Trematodes of the genus Cotylophoron cause mucosal lesions in pre-stomachs and in small intestine in cattle, generating losses in animal production. In the Northeastern Peruvian Amazon, the presence of Cotylophoron panamensis in the 16.7% (4/24) in free-living red brocket deers (Mazama americana) in areas distant from livestock farming suggests the red brocket is a natural wild host of C. panamensis.

Diversity, abundance and ecological importance of plant species for medical use in tropical forest of Tingo Maria, Peru / Diversidad, abundancia e importancia ecológica de especies vegetales de uso medicinal de la selva tropical en Tingo María, Perú

Peru is a megadiverse country due to the large number of animal and plant species. Its diversity derives from the different ecoregions present that developed with geological evolution. Much of its plant diversity is contained in the Peruvian Amazon, which includes a large proportion of plant species, many of them endemic. Of this diversity, many plants have been underestimated, and it is believed that more than 50% of them have not been recorded. These scientific gaps also address medicinal plants, their taxonomic identification, phytochemical bioactives produced, mechanisms of action of phytochemicals, and the metabolic pathways involved. These medicinal plants are active against common diseases such as: protozoa, with emphasis on malaria and leishmania, diabetes, inflammation, hypertension, cancer, infectious diseases (viral, bacterial, and fungal), kidney, liver, diarrhea and other health problems. This work is based on the study of a forest area in the district of Rupa Rupa called Reserve Forest of the Universidad Nacional Agraria de la Selva (BRUNAS) in Tingo María, Peru, which is being highly pressured by the people who live in the surroundings of this forest ecosystem for domestic use, so it is urgent to sensitize the population linked to this natural resource and make known the plants found there with high medicinal potential for the use of the locals, the nation and the world(AU)

El Perú es un país megadiverso debido a la gran cantidad de especies de animales y plantas. Su diversidad se deriva de las diferentes ecorregiones presentes que se fueron desarrollando con evolución geológica. Mucha de su diversidad vegetal está contenida en la Amazonía Peruana que incluye una gran proporción de especies de plantas, muchas de ellas, de carácter endémico. De esta diversidad, muchas plantas han sido subestimada, y se cree que más del 50% de ellas no han sido registrada. Estas lagunas científicas también abordan también a las plantas medicinales, su identificación taxonómica, bioactivos fitoquímicos producidos, mecanismos de acción de los fitoquímicos y las vías metabólicas involucradas. Estas plantas medicinales son activas a enfermedades comunes como: protozoos, con énfasis en la malaria y leishmania, diabetes, inflamación, hipertensión, cáncer, enfermedades infecciosas (virales, bacterianas, y hongos), afecciones renales, hepáticas, diarrea y otros problemas de salud. Este trabajo se basa en el estudio de una zona boscosa del distrito de Rupa Rupa denominada Bosque de Reserva de la Universidad Nacional Agraria de la Selva (BRUNAS) en Tingo María, Perú, la cual esta siendo muy presionada por los pobladores que viven en los alrededores de este ecosistema forestal para uso domésticos, por lo que es urgente sensibilizar a la población vinculada a dicho recurso natural y dar a conocer las plantas allí encontradas con alto potencial medicinal para el uso de los lugareños, de la nación y el mundo(AU)

Aportes al conocimiento de los Laniatores (Arachnida: Opiliones: Grassatores) del departamento de Loreto, Perú / Contributions to knowledge of Laniatores (Arachnida: Opiliones: Grassatores) of the department of Loreto, Peru

Resumen En este trabajo presentamos un análisis del estado del conocimiento y riqueza de los opiliones Laniatores del departamento de Loreto; en general, arácnidos poco conocidos en la Amazonia peruana. Para ello, se revisó la literatura relevante y se examinó la colección del Museo de Historia Natural de la Universidad Nacional Mayor de San Marcos, Lima, Perú. Los resultados muestran 72 especies distribuidas en 11 familias. Las familias más diversas fueron Cosmetidae (34 spp.), Cranaidae (11 spp.) y Stygnidae (8 spp.). Aunque no hay información suficiente, las muestras del río Samiria (23 especies, 11 familias) sugieren un grado de endemismo local muy alto, 10 especies están restringidas solo a esta localidad. Con este trabajo se suman 52 especies de Laniatores a las 19 previamente registradas en la literatura para el departamento de Loreto y se registran por primera vez en Perú las familias Biantidae, Samoidae y Stygnommatidae. Aquí se reportan 12 por primera vez para Perú: Cocholla simoni Roewer, Cynorta marginalis Banks, Discosomaticus cinctus (Perty), Meterginus serratus Roewer, Paecilaemula argentinoi Soares, Sibambea rotunda Roewer, Taito insperatus Kury & Barros, Taito rorschachi Kury & Barros, Ventripila marginata Roewer, Hutamaia plei Tourinho & Mendes, Obidosus boibumba (Villarreal & Pinto-da-Rocha), y Stenostygnus pusio Simon.

Abstract In this paper we present an analysis of the state of knowledge and species richness of the Laniatores harvestmen from the department of Loreto, a group of little-known arachnids in the Peruvian Amazon. To do this, relevant literature was reviewed and the collection of the Natural History Museum of the Universidad Nacional Mayor de San Marcos, Lima, Peru was examined. Our results show 72 species distributed in 11 families. Cosmetidae (34 spp.), Cranaidae (11 spp.) and Stygnidae (8 spp.) were the most diverse families. Although there is insufficient information, samples from Samiria River (23 species, 11 families) suggest a very high degree of local endemism, 10 species are restricted only to this locality. With this work, 52 species of Laniatores are added to 19 previously recorded for the Loreto department. Families Biantidae, Samoidae and Stygnommatidae are recorded for the first time in Peru. In addition, 12 new species are reported here for the first time in Peru: Cocholla simoni Roewer, Cynorta marginalis Banks, Discosomaticus cinctus (Perty), Meterginus serratus Roewer, Paecilaemula argentinoi Soares, Sibambea rotunda Roewer, Taito insperatus Kury & Barros, Taito rorschachi Kury & Barros, Ventripila marginata Roewer, Hutamaia plei Tourinho & Mendes, Obidosus boibumba (Villarreal & Pinto-da-Rocha), and Stenostygnus pusio Simon.

A guide for optimal iodine staining and high-throughput diceCT scanning in snakes.

Diffusible iodine-based contrast-enhanced computed tomography (diceCT) visualizes soft tissue from micro-CT (µCT) scans of specimens to uncover internal features and natural history information without incurring physical damage via dissection. Unlike hard-tissue imaging, taxonomic sampling within diceCT datasets is currently limited. To initiate best practices for diceCT in a nonmodel group, we outline a guide for staining and high-throughput µCT scanning in snakes. We scanned the entire body and one region of interest (i.e., head) for 23 specimens representing 23 species from the clades Aniliidae, Dipsadinae, Colubrinae, Elapidae, Lamprophiidae, and Viperidae. We generated 82 scans that include 1.25% Lugol's iodine stained (soft tissue) and unstained (skeletal) data for each specimen. We found that duration of optimal staining time increased linearly with body size; head radius was the best indicator. Postreconstruction of scans, optimal staining was evident by evenly distributed grayscale values and clear differentiation among soft-tissue anatomy. Under and over stained specimens produced poor contrast among soft tissues, which was often exacerbated by user bias during "digital dissections" (i.e., segmentation). Regardless, all scans produced usable data from which we assessed a range of downstream analytical applications within ecology and evolution (e.g., predator-prey interactions, life history, and morphological evolution). Ethanol destaining reversed the known effects of iodine on the exterior appearance of physical specimens, but required substantially more time than reported for other destaining methods. We discuss the feasibility of implementing diceCT techniques for a new user, including approximate financial and temporal commitments, required facilities, and potential effects of staining on specimens. We present the first high-throughput workflow for full-body skeletal and diceCT scanning in snakes, which can be generalized to any elongate vertebrates, and increases publicly available diceCT scans for reptiles by an order of magnitude.

Secondary Forests and Agrarian Transitions: Insights from Nepal and Peru.

We provide an analytical contrast of the dynamics of secondary forest regeneration in Nepal and Peru framed by a set of common themes: land access, boundaries, territories, and rights, seemingly more secure in Nepal than Peru; processes of agrarian change and their consequences for forest-agriculture interactions and the role of secondary forest in the landscape, more marked in Peru, where San Martín is experiencing apparent agricultural intensification, than in Nepal; and finally processes of social differentiation that have consequences for different social groups, livelihood construction and their engagement with trees, common to both countries. These themes address the broader issue of the necessary conditions for secondary forest regeneration and the extent to which the rights and livelihood benefits of those actively managing it are secured.

Primer niño logrado por fertilización in vitro en la Amazonía del Perú / First baby achieved by in vitro fertilization in the Peruvian Amazon / First baby achieved by in vitro fertilization in the Peruvian Amazon

RESUMEN En el Perú, la mayoría de centros de fertilidad se encuentran en Lima, ciudad capital, y en algunas pocas ciudades principales de la costa y sierra del país. Por ello, muchas parejas de la región amazónica con la finalidad de iniciar su tratamiento de reproducción asistida se ven obligadas a trasladarse fuera de su ciudad de domicilio, a pesar de las enormes dificultades que esto les representa. En el presente reporte, describimos el primer nacimiento por fertilización in vitro (FIV) en la Región Amazónica del Perú, donde todos los procedimientos médicos y de laboratorio de reproducción asistida fueron realizados in situ.

ABSTRACT In Peru, most fertility centers are located in Lima, the capital city of Perú, and in a few main cities on the country's coast and the Andes. For this reason, many couples in the Amazon are forced to relocate outside their city of residence to start their assisted reproduction treatment, despite the enormous difficulties that this represents for them. In this report, we describe the first baby born by in vitro fertilization (IVF) in the Amazon Region of Peru, where all medical and laboratory assisted reproduction procedures were performed in situ.

Metabolomic approach of the antiprotozoal activity of medicinal Piper species used in Peruvian Amazon.

ETHNOPHARMACOLOGICAL RELEVANCE: In the Peruvian Amazon as in the tropical countries of South America, the use of medicinal Piper species (cordoncillos) is common practice, particularly against symptoms of infection by protozoal parasites. However, there is few documented information about the practical aspects of their use and few scientific validation. The starting point of this work was a set of interviews of people living in six rural communities from the Peruvian Amazon (Alto Amazonas Province) about their uses of plants from Piper genus: one community of Amerindian native people (Shawi community) and five communities of mestizos. Infections caused by parasitic protozoa take a huge toll on public health in the Amazonian communities, who partly fight it using traditional remedies. Validation of these traditional practices contributes to public health care efficiency and may help to identify new antiprotozoal compounds. AIMS OF STUDY: To record and validate the use of medicinal Piper species by rural people of Alto Amazonas Province (Peru) and annotate active compounds using a correlation study and a data mining approach. MATERIALS AND METHODS: Rural communities were interviewed about traditional medication against parasite infections with medicinal Piper species. Ethnopharmacological surveys were undertaken in five mestizo villages, namely: Nueva Arica, Shucushuyacu, Parinari, Lagunas and Esperanza, and one Shawi community (Balsapuerto village). All communities belong to the Alto Amazonas Province (Loreto region, Peru). Seventeen Piper species were collected according to their traditional use for the treatment of parasitic diseases, 35 extracts (leaves or leaves and stems) were tested in vitro on P. falciparum (3D7 chloroquine-sensitive strain and W2 chloroquine-resistant strain), Leishmania donovani LV9 strain and Trypanosoma brucei gambiense. Assessments were performed on HUVEC cells and RAW 264.7 macrophages. The annotation of active compounds was realized by metabolomic analysis and molecular networking approach. RESULTS: Nine extracts were active (IC50 ≤ 10 µg/mL) on 3D7 P. falciparum and only one on W2 P. falciparum, six on L. donovani (axenic and intramacrophagic amastigotes) and seven on Trypanosoma brucei gambiense. Only one extract was active on all three parasites (P. lineatum). After metabolomic analyses and annotation of compounds active on Leishmania, P. strigosum and P. pseudoarboreum were considered as potential sources of leishmanicidal compounds. CONCLUSIONS: This ethnopharmacological study and the associated in vitro bioassays corroborated the relevance of use of Piper species in the Amazonian traditional medicine, especially in Peru. A series of Piper species with few previously available phytochemical data have good antiprotozoal activity and could be a starting point for subsequent promising work. Metabolomic approach appears to be a smart, quick but still limited methodology to identify compounds with high probability of biological activity.

Healthcare and Health Problems from the Perspective of Indigenous Population of the Peruvian Amazon: A Qualitative Study.

Indigenous communities usually experience higher levels of mortality and poorer access to healthcare services compared to non-indigenous communities. This study aims to understand the most prevalent health problems and their treatment in the Asháninka indigenous communities of the Peruvian Amazon. We conducted an ethnographic study in order to explore the perceived health problems, the use of traditional medicine and the resources offered by the official Peruvian healthcare system. Field notes and semi-structured interviews were used. A total of 16 indigenous and four non-indigenous people were interviewed, and interpretative analysis was used to identify themes. The Asháninka community is an overlooked population, which, due to distance restrictions, misconceptions and ethnical disparities, is far away from an appropriate healthcare system and is subjected to acute medical conditions such as infections and gastrointestinal problems. This group tends to seek traditional medicine, mostly herbal medications and traditional healers. The use of a health professional is seen as a last resort. Although the official Peruvian health system incorporates community participation strategies to improve the healthcare of indigenous people, the shortage of material, human resources and cultural sensitivity makes this difficult. Healthcare strategies should be devised and implemented in order to minimize health inequality in this population.